Spelt Apple Pie Breakfast Muffins are soft, lightly spiced muffins made with whole spelt flour, diced apples, and a cinnamon-oat crumble on top. They bake in a standard 12-cup muffin pan at 190C / 375F and come out moist, not gummy, in about 22 minutes.
Spelt flour gives the crumb a nutty flavor and a lighter texture than regular whole wheat. It has less gluten than all-purpose flour, so the batter stays soft when you fold it gently.
I dice the apples small, about 1 cm / 1/2 inch, so they cook through in the short bake time and don’t leave wet pockets in the muffin. Cinnamon and nutmeg go into both the batter and the crumble, so the apple pie flavor comes through in every bite.
You can mix the batter in one bowl, prep the crumble while the oven heats, and have muffins ready before the coffee finishes brewing.
Why You’ll Love This Recipe
- Whole spelt flour adds nutty flavor and lighter crumb
- Cinnamon-oat crumble adds crunch without extra mixing steps
- Diced apples stay in every bite, no soggy centers
- One bowl batter comes together in under 15 minutes

Ingredient Notes
- spelt flour: Whole spelt flour gives a nutty flavor and lighter texture than regular whole wheat. Swap in white spelt flour for a milder taste and lighter color.
- apples: Use a firm, tart apple like Granny Smith or Honeycrisp so pieces hold their shape after baking. Avoid soft varieties like Red Delicious, they turn mushy.
- honey: Honey keeps the muffins moist and adds a mild sweetness. Maple syrup works as a swap in the same amount.
- butter: Melted butter adds richness to the batter. Swap in the same amount of neutral oil for a lighter version, though the crumb will be slightly less tender.
- whole milk: Whole milk keeps the batter moist without thinning it too much. Any dairy or unsweetened plant milk works fine here.
- rolled oats: Rolled oats give the crumble topping its texture. Quick oats work too, but the crumble will be finer.
- eggs: Eggs bind the batter and help the muffins rise. Room temperature eggs mix in more evenly than cold ones.

Soft Spelt Apple Pie Breakfast Muffins with Crumble
Description
These spelt apple pie breakfast muffins use whole spelt flour and diced apple for a moist crumb topped with a buttery cinnamon crumble.
Ingredients
Muffins
Crumble Topping
Instructions
- Heat the oven to 190C / 375F. Line a 12-cup muffin pan with paper liners or grease well.
- Make the crumble: mix the spelt flour, oats, brown sugar, and cinnamon in a small bowl. Rub in the cold butter with your fingers until it looks like coarse crumbs. Chill in the fridge while you make the batter.
- Whisk the spelt flour, baking powder, baking soda, cinnamon, nutmeg, and salt together in a large bowl.
- In a separate bowl, whisk the eggs, milk, melted butter, honey, and vanilla until smooth.
- Pour the wet ingredients into the dry and fold gently until just combined. Stop as soon as the flour disappears, a few small lumps are fine, overmixing makes the muffins tough.
- Fold in the diced apples until evenly distributed.
- Divide the batter evenly among the muffin cups, filling each about three-quarters full.
- Sprinkle the chilled crumble topping generously over each muffin.
- Bake for 20 to 22 minutes, until a toothpick inserted in a center muffin comes out clean and the tops spring back when pressed.
- Cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.
Nutrition Facts
Servings 12
- Amount Per Serving
- Calories 229kcal
- % Daily Value *
- Total Fat 9g14%
- Saturated Fat 5g25%
- Cholesterol 35mg12%
- Sodium 230mg10%
- Potassium 150mg5%
- Total Carbohydrate 34g12%
- Dietary Fiber 4g16%
- Sugars 10g
- Protein 5g10%
- Vitamin A 150 IU
- Vitamin C 2 mg
- Calcium 90 mg
- Iron 1.5 mg
- Vitamin D 10 IU
- Vitamin E 0.5 mg
- Vitamin K 1 mcg
- Thiamin 0.15 mg
- Riboflavin 0.1 mg
- Niacin 1 mg
- Vitamin B6 0.05 mg
- Folate 20 mcg
- Vitamin B12 0.15 mcg
- Phosphorus 110 mg
- Magnesium 25 mg
- Zinc 0.8 mg
* Percent Daily Values are based on a 2,000 calorie diet. Your daily value may be higher or lower depending on your calorie needs.
Note
Additional Notes
- Dice apples small and even for consistent cooking throughout the muffin.
- Chill crumble butter so topping stays clumpy, not melted, in the oven.
- Don't overmix the batter, spelt flour tightens quickly and turns muffins tough.
- Toothpick test the center muffin, apples add moisture that skews edge muffins.
